KEGG   Homo sapiens (human): 55193
Entry
55193             CDS       T01001                                 
Symbol
PBRM1, BAF180, PB1, RCC, SMARCH1
Name
(RefSeq) polybromo 1
  KO
K11757  protein polybromo-1
Organism
hsa  Homo sapiens (human)
Pathway
hsa03082  ATP-dependent chromatin remodeling
hsa05225  Hepatocellular carcinoma
Disease
H00021  Renal cell carcinoma
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    55193 (PBRM1)
 09160 Human Diseases
  09162 Cancer: specific types
   05225 Hepatocellular carcinoma
    55193 (PBRM1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hsa03021]
    55193 (PBRM1)
   03036 Chromosome and associated proteins [BR:hsa03036]
    55193 (PBRM1)
Transcription machinery [BR:hsa03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     55193 (PBRM1)
Chromosome and associated proteins [BR:hsa03036]
 Eukaryotic type
  Chromatin remodeling factors
   PBAF complex
    55193 (PBRM1)
SSDB
Motif
Pfam: Bromodomain BAH HMG_box HMG_box_2
Other DBs
NCBI-GeneID: 55193
NCBI-ProteinID: NP_060783
OMIM: 606083
HGNC: 30064
Ensembl: ENSG00000163939
UniProt: Q86U86
Structure
Position
3:complement(52545367..52685913)
AA seq 1582 aa
MGSKRRRATSPSSSVSGDFDDGHHSVSTPGPSRKRRRLSNLPTVDPIAVCHELYNTIRDY
KDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLF
NNAKSYYKPDSPEYKAACKLWDLYLRTRNEFVQKGEADDEDDDEDGQDNQGTVTEGSSPA
YLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNG
SYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFYMKKAEIEHHEMAKSSLRMR
TPSNLAAARLTGPSHSKGSLGEERNPTSKYYRNKRAVQGGRLSAITMALQYGSESEEDAA
LAAARYEEGESEAESITSFMDVSNPFYQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDY
YQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQVM
QAKKKELARRDDIEDGDSMISSATSDTGSAKRKSKKNIRKQRMKILFNVVLEAREPGSGR
RLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHY
NEEGSQVYNDAHILEKLLKEKRKELGPLPDDDDMASPKLKLSRKSGISPKKSKYMTPMQQ
KLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQD
IDSMVEDFVMMFNNACTYNEPESLIYKDALVLHKVLLETRRDLEGDEDSHVPNVTLLIQE
LIHNLFVSVMSHQDDEGRCYSDSLAEIPAVDPNFPNKPPLTFDIIRKNVENNRYRRLDLF
QEHMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRDELCKNGEILLSPALSYTTKHLHN
DVEKERKEKLPKEIEEDKLKREEEKREAEKSEDSSGAAGLSGLHRTYSQDCSFKNSMYHV
GDYVYVEPAEANLQPHIVCIERLWEDSAEKEVFKSDYYNKVPVSKILGKCVVMFVKEYFK
LCPENFRDEDVFVCESRYSAKTKSFKKIKLWTMPISSVRFVPRDVPLPVVRVASVFANAD
KGDDEKNTDNSEDSRAEDNFNLEKEKEDVPVEMSNGEPGCHYFEQLHYNDMWLKVGDCVF
IKSHGLVRPRVGRIEKVWVRDGAAYFYGPIFIHPEETEHEPTKMFYKKEVFLSNLEETCP
MTCILGKCAVLSFKDFLSCRPTEIPENDILLCESRYNESDKQMKKFKGLKRFSLSAKVVD
DEIYYFRKPIVPQKEPSPLLEKKIQLLEAKFAELEGGDDDIEEMGEEDSESTPKSAKGSA
KKEGSKRKINMSGYILFSSEMRAVIKAQHPDYSFGELSRLVGTEWRNLETAKKAEYEGMM
GGYPPGLPPLQGPVDGLVSMGSMQPLHPGGPPPHHLPPGVPGLPGIPPPGVMNQGVAPMV
GTPAPGGSPYGQQVGVLGPPGQQAPPPYPGPHPAGPPVIQQPTTPMFVAPPPKTQRLLHS
EAYLKYIEGLSAESNSISKWDQTLAARRRDVHLSKEQESRLPSHWLKSKGAHTTMADALW
RLRDLMLRDTLNIRQAYNLENV
NT seq 4749 nt   +upstreamnt  +downstreamnt
atgggttccaagagaagaagagctacctccccttccagcagtgtcagcggggactttgat
gatgggcaccattctgtgtcaacaccaggcccaagcaggaaaaggaggagactttccaat
cttccaactgtagatcctattgccgtgtgccatgaactctataataccatccgagactat
aaggatgaacagggcagacttctctgtgagctcttcattagggcaccaaagcgaagaaat
caaccagactattatgaagtggtttctcagcccattgacttgatgaaaatccaacagaaa
ctaaaaatggaagagtatgatgatgttaatttgctgactgctgacttccagcttcttttt
aacaatgcaaagtcctattataagccagattctcctgaatataaagccgcttgcaaactc
tgggatttgtaccttcgaacaagaaatgagtttgttcagaaaggagaagcagatgacgaa
gatgatgatgaagatgggcaagacaatcagggcacagtgactgaaggatcttctccagct
tacttgaaggagatcctggagcagcttcttgaagccatagttgtagctacaaatccatca
ggacgtctcattagcgaactttttcagaaactgccttctaaagtgcaatatccagattat
tatgcaataattaaggagcctatagatctcaagaccattgcccagaggatacagaatgga
agctacaaaagtattcatgcaatggccaaagatatagatctcctcgcaaaaaatgccaaa
acttataatgagcctggctctcaagtattcaaggatgcaaattcaattaaaaaaatattt
tatatgaaaaaggctgaaattgaacatcatgaaatggctaagtcaagtcttcgaatgagg
actccatccaacttggctgcagccagactgacaggtccttcacacagtaaaggcagcctt
ggtgaagagagaaatcccactagcaagtattaccgtaataaaagagcagtacaaggaggt
cgtttatcagcaattacaatggcacttcaatatggctcagaaagtgaagaagatgctgct
ttagctgctgcacgctatgaagagggagagtcagaagcagaaagcatcacttcctttatg
gatgtttcaaatcctttttatcagctttatgacacagttaggagttgtcggaataaccaa
gggcagctaatagctgaacctttttaccatttgccttcaaagaaaaaataccctgattat
taccagcaaattaaaatgcccatatcactacaacagatccgaacaaaactgaagaatcaa
gaatatgaaactttagatcatttggagtgtgatctgaatttaatgtttgaaaatgccaaa
cgctataatgtgcccaattcagccatctacaagcgagttctaaaattgcagcaagttatg
caggcaaagaagaaagagcttgccaggagagacgatatcgaggacggagacagcatgatc
tcttcagccacctctgatactggtagtgccaaaagaaaaagtaaaaagaacataagaaag
cagcgaatgaaaatcttattcaatgttgttcttgaagctcgagagccaggttcaggcaga
agactttgtgacctatttatggttaaaccatccaaaaaggactatcctgattattataaa
atcatcttggagccaatggacttgaaaataattgagcataacatccgcaatgacaaatat
gctggtgaagagggaatgatagaagacatgaagctgatgttccggaatgccaggcactat
aatgaggagggctcccaggtttataatgatgcacatatcctggagaagttactcaaggag
aaaaggaaagagctgggcccactgcctgatgatgatgacatggcttctcccaaactcaag
ctgagtaggaagagtggcatttctcctaaaaaatcaaaatacatgactccaatgcagcag
aaactaaatgaggtctatgaagctgtaaagaactatactgataagaggggtcgccgcctc
agtgccatatttctgaggcttccctctagatctgagttgcctgactactatctgactatt
aaaaagcccatggacatggaaaaaattcgaagtcacatgatggccaacaagtaccaagat
attgactctatggttgaggactttgtcatgatgtttaataatgcctgtacatacaatgag
ccggagtctttgatctacaaagatgctcttgttctacacaaagtcctgcttgaaacacgc
agagacctggagggagatgaggactctcatgtcccaaatgtgactttgctgattcaagag
cttatccacaatctttttgtgtcagtcatgagtcatcaggatgatgagggaagatgctac
agcgattctttagcagaaattcctgctgtggatcccaactttcctaacaaaccacccctt
acatttgacataattaggaagaatgttgaaaataatcgctaccgtcggcttgatttattt
caagagcatatgtttgaagtattggaacgagcaagaaggatgaatcggacagattcagaa
atatatgaagatgcagtagaacttcagcagttttttattaaaattcgtgatgaactctgc
aaaaatggagagattcttctttcaccggcactcagctataccacaaaacatttgcataat
gatgtggagaaagagagaaaggaaaaattgccaaaagaaatagaggaagataaactaaaa
cgagaagaagaaaaaagagaagctgaaaagagtgaagattcctctggtgctgcaggcctc
tcaggcttacatcgcacatacagccaggactgtagctttaaaaacagcatgtaccatgtt
ggagattacgtctatgtggaacctgcagaggccaacctacaaccacatatcgtctgtatt
gaaagactgtgggaggattcagctgaaaaagaagtttttaagagtgactattacaacaaa
gttccagttagtaaaattctaggcaagtgtgtggtcatgtttgtcaaggaatactttaag
ttatgcccagaaaacttccgagatgaggatgtttttgtctgtgaatcacggtattctgcc
aaaaccaaatcttttaagaaaattaaactgtggaccatgcccatcagctcagtcaggttt
gtccctcgggatgtgcctctgcctgtggttcgcgtggcctctgtatttgcaaatgcagat
aaaggtgatgatgagaagaatacagacaactcagaggacagtcgagctgaagacaatttt
aacttggaaaaggaaaaagaagatgtccctgtggaaatgtccaatggtgaaccaggttgc
cactactttgagcagctccattacaatgacatgtggctgaaggttggcgactgtgtcttc
atcaagtcccatggcctggtgcgtcctcgtgtgggcagaattgaaaaagtatgggttcga
gatggagctgcatatttttatggccccatcttcattcacccagaagaaacagagcatgag
cccacaaaaatgttctacaaaaaagaagtatttctgagtaatctggaagaaacctgcccc
atgacatgtattctcggaaagtgtgctgtgttgtcattcaaggacttcctctcctgcagg
ccaactgaaataccagaaaatgacattctgctttgtgagagccgctacaatgagagcgac
aagcagatgaagaaattcaaaggattgaagaggttttcactctctgctaaagtggtagat
gatgaaatttactacttcagaaaaccaattgttcctcagaaggagccatcacctttgctg
gaaaagaagatccagttgctagaagctaaatttgccgagttagaaggtggagatgatgat
attgaagagatgggagaagaagatagtgagtctaccccaaagtctgccaaaggcagtgca
aagaaggaaggctccaaacggaaaatcaacatgagtggctacatcctgttcagcagtgag
atgagggctgtgattaaggcccaacacccagactactctttcggggagctcagccgcctg
gtggggacagaatggagaaatcttgagacagccaagaaagcagaatatgaaggcatgatg
ggtggctatccgccaggccttccacctttgcagggcccagttgatggccttgttagcatg
ggcagcatgcagccacttcaccctggggggcctccaccccaccatcttccgccaggtgtg
cctggcctcccgggcatcccaccaccgggtgtgatgaaccaaggagtggcccctatggta
gggactccagcaccaggtggaagtccatatggacaacaggtgggagttttggggcctcca
gggcagcaggcaccacctccatatcccggcccacatccagctggaccccctgtcatacag
cagccaacaacacccatgtttgtagctcccccaccaaagacccagcggcttcttcactca
gaggcctacctgaaatacattgaaggactcagtgcggagtccaacagcattagcaagtgg
gatcagacactggcagctcgaagacgcgacgtccatttgtcgaaagaacaggagagccgc
ctaccctctcactggctgaaaagcaaaggggcccacaccaccatggcagatgccctctgg
cgccttcgagatttgatgctccgggacaccctcaacattcgccaagcatacaacctagaa
aatgtttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Disease (3)   
   KEGG DISEASE (1)   
   OMIM (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (1)   
   OC (1)   
Protein sequence (204)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (202)   
DNA sequence (269)   
   RefSeq(nuc) (205)   
   GenBank (32)   
   EMBL (32)   
3D Structure (29)   
   PDB (29)   
Protein domain (4)   
   Pfam (4)   
All databases (537)   

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